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miRCancerdb: a database for correlation analysis between microRNA and gene expression in cancer
DBName miRCancerdb
Datatime 2017-05-07 09:25:01
Summary Expression data of miRNAs, mRNAs and proteins in cancer patients from The Cancer Genome Atlas along with TargetScan miRNAs-target annotations were used to calculate the expression correlations between miRNAs
Keywords cancer,microRNA,TCGA
Principals Mahmoud Ahmed, Huynh Nguyen, Trang Lai, Deok Ryong Kim
Units Gyeonsange National University School of Medicine
Charset utf-8
Email drkim@gnu.ac.kr
Classification 癌症; MicroRNA
Limit unlimited
Linking https://mahshaaban.shinyapps.io/miRCancerdb/

The expression data was obtained from The Cancer Genome Atlas ( TCGA ) using RTCGA R package. And the targets data were obtained form TargetScan using targetscan.Hs.eg.db Bioconductor package,involving34 tumors

Expression data of miRNAs, mRNAs and proteins in cancer patients from The Cancer Genome Atlas along with TargetScan miRNAs-target annotations were used to calculate the expression correlations between miRNAs and features (mRNAs/proteins) in a number of ca